J4_4TUD_006

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUD_006 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0797

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4TUD|1|RA|C|297
4TUD|1|RA|G|298
4TUD|1|RA|A|299
4TUD|1|RA|A|300
4TUD|1|RA|G|301
*
4TUD|1|RA|C|316
4TUD|1|RA|G|317
4TUD|1|RA|C|318
4TUD|1|RA|C|319
*
4TUD|1|RA|G|323
4TUD|1|RA|A|324
4TUD|1|RA|G|325
*
4TUD|1|RA|C|337
4TUD|1|RA|G|338
4TUD|1|RA|U|339
4TUD|1|RA|A|340
4TUD|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24