J4_4TUE_006

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUE_006 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0816

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4TUE|1|RA|C|297
4TUE|1|RA|G|298
4TUE|1|RA|A|299
4TUE|1|RA|A|300
4TUE|1|RA|G|301
*
4TUE|1|RA|C|316
4TUE|1|RA|G|317
4TUE|1|RA|C|318
4TUE|1|RA|C|319
*
4TUE|1|RA|G|323
4TUE|1|RA|A|324
4TUE|1|RA|G|325
*
4TUE|1|RA|C|337
4TUE|1|RA|G|338
4TUE|1|RA|U|339
4TUE|1|RA|A|340
4TUE|1|RA|G|341

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24