J4_4TUE_008

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4TUE|1|RA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4TUE_008 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0779

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4TUE|1|RA|G|1310
4TUE|1|RA|G|1311
4TUE|1|RA|U|1312
4TUE|1|RA|U|1313
4TUE|1|RA|C|1314
*
4TUE|1|RA|G|1338
4TUE|1|RA|G|1339
4TUE|1|RA|U|1340
4TUE|1|RA|U|1341
4TUE|1|RA|A|1342
4TUE|1|RA|G|1343
*
4TUE|1|RA|C|1404
4TUE|1|RA|U|1405
*
4TUE|1|RA|A|1597
4TUE|1|RA|C|1598
4TUE|1|RA|C|1599
4TUE|1|RA|C|1600
4TUE|1|RA|G|1601
4TUE|1|RA|U|1602
4TUE|1|RA|A|1603
4TUE|1|RA|C|1604

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23