J4_4TZZ_001
3D structure
- PDB id
- 4TZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- GUAG*CAC*GGGGUCG*UC
- Length
- 16 nucleotides
- Bulged bases
- 4TZZ|1|B|U|8, 4TZZ|1|B|U|46, 4TZZ|1|B|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4TZZ|1|B|G|7
4TZZ|1|B|U|8
4TZZ|1|B|A|9
4TZZ|1|B|G|10
*
4TZZ|1|B|C|24
4TZZ|1|B|A|25
4TZZ|1|B|C|26
*
4TZZ|1|B|G|42
4TZZ|1|B|G|43
4TZZ|1|B|G|44
4TZZ|1|B|G|45
4TZZ|1|B|U|46
4TZZ|1|B|C|47
4TZZ|1|B|G|48
*
4TZZ|1|B|U|64
4TZZ|1|B|C|65
Current chains
- Chain B
- engineered tRNAGly
Nearby chains
- Chain C
- T-box leader
- Chain E
- Transfer RNA; tRNA
Coloring options: