J4_4U1V_005

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U1V_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0645

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4U1V|1|BA|G|297
4U1V|1|BA|G|298
4U1V|1|BA|A|299
4U1V|1|BA|A|300
4U1V|1|BA|G|301
*
4U1V|1|BA|C|316
4U1V|1|BA|G|317
4U1V|1|BA|C|318
4U1V|1|BA|G|319
*
4U1V|1|BA|C|323
4U1V|1|BA|A|324
4U1V|1|BA|G|325
*
4U1V|1|BA|C|337
4U1V|1|BA|G|338
4U1V|1|BA|U|339
4U1V|1|BA|A|340
4U1V|1|BA|C|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24