J4_4U1V_006

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4U1V|1|BA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U1V_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.0646

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4U1V|1|BA|C|601
4U1V|1|BA|A|602
4U1V|1|BA|A|603
4U1V|1|BA|G|604
*
4U1V|1|BA|C|624
4U1V|1|BA|G|625
4U1V|1|BA|A|626
4U1V|1|BA|A|627
4U1V|1|BA|G|628
*
4U1V|1|BA|C|635
4U1V|1|BA|G|636
4U1V|1|BA|A|637
4U1V|1|BA|G|638
*
4U1V|1|BA|C|650
4U1V|1|BA|G|651
4U1V|1|BA|U|652
4U1V|1|BA|U|653
4U1V|1|BA|A|654
4U1V|1|BA|A|655
4U1V|1|BA|G|656

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15