J4_4U1V_029

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4U1V|1|BA|C|1925, 4U1V|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U1V_029 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.3669

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4U1V|1|BA|C|1833
4U1V|1|BA|U|1834
4U1V|1|BA|G|1835
*
4U1V|1|BA|C|1905
4U1V|1|BA|G|1906
*
4U1V|1|BA|C|1924
4U1V|1|BA|C|1925
4U1V|1|BA|U|1926
4U1V|1|BA|A|1927
4U1V|1|BA|A|1928
4U1V|1|BA|G|1929
4U1V|1|BA|G|1930
4U1V|1|BA|U|1931
4U1V|1|BA|A|1932
4U1V|1|BA|G|1933
*
4U1V|1|BA|C|1967
4U1V|1|BA|G|1968
4U1V|1|BA|A|1969
4U1V|1|BA|A|1970
4U1V|1|BA|U|1971
4U1V|1|BA|G|1972

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2