J4_4U24_019

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAG*CGAAG*CGAG*CGUUAAGU

Length

22 nucleotides

Bulged bases

4U24|1|DA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|DA|G|600
4U24|1|DA|C|601
4U24|1|DA|A|602
4U24|1|DA|A|603
4U24|1|DA|G|604
*
4U24|1|DA|C|624
4U24|1|DA|G|625
4U24|1|DA|A|626
4U24|1|DA|A|627
4U24|1|DA|G|628
*
4U24|1|DA|C|635
4U24|1|DA|G|636
4U24|1|DA|A|637
4U24|1|DA|G|638
*
4U24|1|DA|C|650
4U24|1|DA|G|651
4U24|1|DA|U|652
4U24|1|DA|U|653
4U24|1|DA|A|654
4U24|1|DA|A|655
4U24|1|DA|G|656
4U24|1|DA|U|657

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15