J4_4U24_022

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCC*GGGUGAG*CU*AAUCGUA

Length

19 nucleotides

Bulged bases

4U24|1|DA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|DA|U|1313
4U24|1|DA|C|1314
4U24|1|DA|C|1315
*
4U24|1|DA|G|1337
4U24|1|DA|G|1338
4U24|1|DA|G|1339
4U24|1|DA|U|1340
4U24|1|DA|G|1341
4U24|1|DA|A|1342
4U24|1|DA|G|1343
*
4U24|1|DA|C|1404
4U24|1|DA|U|1405
*
4U24|1|DA|A|1597
4U24|1|DA|A|1598
4U24|1|DA|U|1599
4U24|1|DA|C|1600
4U24|1|DA|G|1601
4U24|1|DA|U|1602
4U24|1|DA|A|1603

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23