J4_4U24_030

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CGG*UCCUAAGGUAG*CGAAUG

Length

23 nucleotides

Bulged bases

4U24|1|BA|C|1925, 4U24|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|BA|C|1833
4U24|1|BA|U|1834
4U24|1|BA|G|1835
*
4U24|1|BA|C|1905
4U24|1|BA|G|1906
4U24|1|BA|G|1907
*
4U24|1|BA|U|1923
4U24|1|BA|C|1924
4U24|1|BA|C|1925
4U24|1|BA|U|1926
4U24|1|BA|A|1927
4U24|1|BA|A|1928
4U24|1|BA|G|1929
4U24|1|BA|G|1930
4U24|1|BA|U|1931
4U24|1|BA|A|1932
4U24|1|BA|G|1933
*
4U24|1|BA|C|1967
4U24|1|BA|G|1968
4U24|1|BA|A|1969
4U24|1|BA|A|1970
4U24|1|BA|U|1971
4U24|1|BA|G|1972

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2