J4_4U25_005
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAG*CGCG*CAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4U25_005 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.0481
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4U25|1|BA|G|297
4U25|1|BA|G|298
4U25|1|BA|A|299
4U25|1|BA|A|300
4U25|1|BA|G|301
*
4U25|1|BA|C|316
4U25|1|BA|G|317
4U25|1|BA|C|318
4U25|1|BA|G|319
*
4U25|1|BA|C|323
4U25|1|BA|A|324
4U25|1|BA|G|325
*
4U25|1|BA|C|337
4U25|1|BA|G|338
4U25|1|BA|U|339
4U25|1|BA|A|340
4U25|1|BA|C|341
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BU
- 50S ribosomal protein L24
Coloring options: