J4_4U25_006
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 4U25|1|BA|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4U25_006 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.0678
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U25|1|BA|C|601
4U25|1|BA|A|602
4U25|1|BA|A|603
4U25|1|BA|G|604
*
4U25|1|BA|C|624
4U25|1|BA|G|625
4U25|1|BA|A|626
4U25|1|BA|A|627
4U25|1|BA|G|628
*
4U25|1|BA|C|635
4U25|1|BA|G|636
4U25|1|BA|A|637
4U25|1|BA|G|638
*
4U25|1|BA|C|650
4U25|1|BA|G|651
4U25|1|BA|U|652
4U25|1|BA|U|653
4U25|1|BA|A|654
4U25|1|BA|A|655
4U25|1|BA|G|656
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B3
- 50S ribosomal protein L35
- Chain BE
- 50S ribosomal protein L4
- Chain BL
- 50S ribosomal protein L15
Coloring options: