J4_4U25_008

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4U25|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U25_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0709

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4U25|1|BA|G|1310
4U25|1|BA|G|1311
4U25|1|BA|U|1312
4U25|1|BA|U|1313
4U25|1|BA|C|1314
*
4U25|1|BA|G|1338
4U25|1|BA|G|1339
4U25|1|BA|U|1340
4U25|1|BA|G|1341
4U25|1|BA|A|1342
4U25|1|BA|G|1343
*
4U25|1|BA|C|1404
4U25|1|BA|U|1405
*
4U25|1|BA|A|1597
4U25|1|BA|A|1598
4U25|1|BA|U|1599
4U25|1|BA|C|1600
4U25|1|BA|G|1601
4U25|1|BA|U|1602
4U25|1|BA|A|1603
4U25|1|BA|C|1604

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23