J4_4U25_012

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUG*CGGCC*GGUCCUAAGGUAG*CGAAUG

Length

27 nucleotides

Bulged bases

4U25|1|BA|C|1925, 4U25|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|BA|C|1833
4U25|1|BA|U|1834
4U25|1|BA|G|1835
*
4U25|1|BA|C|1905
4U25|1|BA|G|1906
4U25|1|BA|G|1907
4U25|1|BA|C|1908
4U25|1|BA|C|1909
*
4U25|1|BA|G|1921
4U25|1|BA|G|1922
4U25|1|BA|U|1923
4U25|1|BA|C|1924
4U25|1|BA|C|1925
4U25|1|BA|U|1926
4U25|1|BA|A|1927
4U25|1|BA|A|1928
4U25|1|BA|G|1929
4U25|1|BA|G|1930
4U25|1|BA|U|1931
4U25|1|BA|A|1932
4U25|1|BA|G|1933
*
4U25|1|BA|C|1967
4U25|1|BA|G|1968
4U25|1|BA|A|1969
4U25|1|BA|A|1970
4U25|1|BA|U|1971
4U25|1|BA|G|1972

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2