J4_4U25_017
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4U25|1|CA|C|576, 4U25|1|CA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4U25_017 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.065
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4U25|1|CA|G|575
4U25|1|CA|C|576
4U25|1|CA|G|577
*
4U25|1|CA|C|764
4U25|1|CA|G|765
4U25|1|CA|A|766
4U25|1|CA|A|767
4U25|1|CA|A|768
4U25|1|CA|G|769
*
4U25|1|CA|C|810
4U25|1|CA|C|811
4U25|1|CA|G|812
4U25|1|CA|U|813
4U25|1|CA|A|814
4U25|1|CA|A|815
4U25|1|CA|A|816
4U25|1|CA|C|817
4U25|1|CA|G|818
4U25|1|CA|A|819
4U25|1|CA|U|820
4U25|1|CA|G|821
*
4U25|1|CA|C|879
4U25|1|CA|C|880
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CH
- 30S ribosomal protein S8
- Chain CK
- 30S ribosomal protein S11
- Chain CL
- 30S ribosomal protein S12
- Chain CO
- 30S ribosomal protein S15
- Chain CQ
- 30S ribosomal protein S17
- Chain CU
- 30S ribosomal protein S21
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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