3D structure

PDB id
4U25 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CCAGAG*CUCGAUGAGUAG*UGAAUAUG*CAAG
Length
30 nucleotides
Bulged bases
4U25|1|DA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U25|1|DA|C|268
4U25|1|DA|C|269
4U25|1|DA|A|270
4U25|1|DA|G|271
4U25|1|DA|A|272
4U25|1|DA|G|273
*
4U25|1|DA|C|364
4U25|1|DA|U|365
4U25|1|DA|C|366
4U25|1|DA|G|367
4U25|1|DA|A|368
4U25|1|DA|U|369
4U25|1|DA|G|370
4U25|1|DA|A|371
4U25|1|DA|G|372
4U25|1|DA|U|373
4U25|1|DA|A|374
4U25|1|DA|G|375
*
4U25|1|DA|U|399
4U25|1|DA|G|400
4U25|1|DA|A|401
4U25|1|DA|A|402
4U25|1|DA|U|403
4U25|1|DA|A|404
4U25|1|DA|U|405
4U25|1|DA|G|406
*
4U25|1|DA|C|421
4U25|1|DA|A|422
4U25|1|DA|A|423
4U25|1|DA|G|424

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DH
50S ribosomal protein L9
Chain DX
50S ribosomal protein L28

Coloring options:

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