J4_4U25_018
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAGAG*CUCGAUGAGUAG*UGAAUAUG*CAAG
- Length
- 30 nucleotides
- Bulged bases
- 4U25|1|DA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U25|1|DA|C|268
4U25|1|DA|C|269
4U25|1|DA|A|270
4U25|1|DA|G|271
4U25|1|DA|A|272
4U25|1|DA|G|273
*
4U25|1|DA|C|364
4U25|1|DA|U|365
4U25|1|DA|C|366
4U25|1|DA|G|367
4U25|1|DA|A|368
4U25|1|DA|U|369
4U25|1|DA|G|370
4U25|1|DA|A|371
4U25|1|DA|G|372
4U25|1|DA|U|373
4U25|1|DA|A|374
4U25|1|DA|G|375
*
4U25|1|DA|U|399
4U25|1|DA|G|400
4U25|1|DA|A|401
4U25|1|DA|A|402
4U25|1|DA|U|403
4U25|1|DA|A|404
4U25|1|DA|U|405
4U25|1|DA|G|406
*
4U25|1|DA|C|421
4U25|1|DA|A|422
4U25|1|DA|A|423
4U25|1|DA|G|424
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DH
- 50S ribosomal protein L9
- Chain DX
- 50S ribosomal protein L28
Coloring options: