J4_4U25_029

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAG*CGAUGAGUAG*UGAAUAUG*CAAG

Length

26 nucleotides

Bulged bases

4U25|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|DA|C|268
4U25|1|DA|C|269
4U25|1|DA|A|270
4U25|1|DA|G|271
*
4U25|1|DA|C|366
4U25|1|DA|G|367
4U25|1|DA|A|368
4U25|1|DA|U|369
4U25|1|DA|G|370
4U25|1|DA|A|371
4U25|1|DA|G|372
4U25|1|DA|U|373
4U25|1|DA|A|374
4U25|1|DA|G|375
*
4U25|1|DA|U|399
4U25|1|DA|G|400
4U25|1|DA|A|401
4U25|1|DA|A|402
4U25|1|DA|U|403
4U25|1|DA|A|404
4U25|1|DA|U|405
4U25|1|DA|G|406
*
4U25|1|DA|C|421
4U25|1|DA|A|422
4U25|1|DA|A|423
4U25|1|DA|G|424

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DX

50S ribosomal protein L28