J4_4U26_024

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4U26|1|DA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U26_024 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.096

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4U26|1|DA|C|1833
4U26|1|DA|U|1834
4U26|1|DA|G|1835
*
4U26|1|DA|C|1905
4U26|1|DA|G|1906
*
4U26|1|DA|C|1924
4U26|1|DA|C|1925
4U26|1|DA|U|1926
4U26|1|DA|A|1927
4U26|1|DA|A|1928
4U26|1|DA|G|1929
4U26|1|DA|G|1930
4U26|1|DA|U|1931
4U26|1|DA|A|1932
4U26|1|DA|G|1933
*
4U26|1|DA|C|1967
4U26|1|DA|G|1968
4U26|1|DA|A|1969
4U26|1|DA|A|1970
4U26|1|DA|U|1971
4U26|1|DA|G|1972

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2