J4_4U4O_019
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GACUG*CAUAGCA*UGUGAUU*AUUAAC
- Length
- 25 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U4O|1|5|G|2130
4U4O|1|5|A|2131
4U4O|1|5|C|2132
4U4O|1|5|U|2133
4U4O|1|5|G|2134
*
4U4O|1|5|C|2146
4U4O|1|5|A|2147
4U4O|1|5|U|2148
4U4O|1|5|A|2149
4U4O|1|5|G|2150
4U4O|1|5|C|2151
4U4O|1|5|A|2152
*
4U4O|1|5|U|2184
4U4O|1|5|G|2185
4U4O|1|5|U|2186
4U4O|1|5|G|2187
4U4O|1|5|A|2188
4U4O|1|5|U|2189
4U4O|1|5|U|2190
*
4U4O|1|5|A|2317
4U4O|1|5|U|2318
4U4O|1|5|U|2319
4U4O|1|5|A|2320
4U4O|1|5|A|2321
4U4O|1|5|C|2322
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain q1
- 60S ribosomal protein L41-A
- Chain q3
- 60S ribosomal protein L43-A
Coloring options: