3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUG*CG*CUUAAGGUAG*UGAAUG
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4U50_019 not in the Motif Atlas
Homologous match to J4_8P9A_018
Geometric discrepancy: 0.0903
The information below is about J4_8P9A_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4U50|1|5|C|2192
4U50|1|5|U|2193
4U50|1|5|G|2194
*
4U50|1|5|C|2248
4U50|1|5|G|2249
*
4U50|1|5|C|2267
4U50|1|5|U|2268
4U50|1|5|U|2269
4U50|1|5|A|2270
4U50|1|5|A|2271
4U50|1|5|G|2272
4U50|1|5|G|2273
4U50|1|5|U|2274
4U50|1|5|A|2275
4U50|1|5|G|2276
*
4U50|1|5|U|2310
4U50|1|5|G|2311
4U50|1|5|A|2312
4U50|1|5|A|2313
4U50|1|5|U|2314
4U50|1|5|G|2315

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 6
Small subunit ribosomal RNA; SSU rRNA
Chain l2
60S ribosomal protein L2-A
Chain q1
60S ribosomal protein L41-A

Coloring options:


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