J4_4U53_020

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

4U53|1|5|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U53|1|5|C|2654
4U53|1|5|U|2655
4U53|1|5|A|2656
4U53|1|5|A|2657
4U53|1|5|G|2658
*
4U53|1|5|U|2712
4U53|1|5|U|2713
4U53|1|5|G|2714
*
4U53|1|5|C|2741
4U53|1|5|C|2742
*
4U53|1|5|G|2751
4U53|1|5|U|2752
4U53|1|5|G|2753

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain n1

60S ribosomal protein L21-A

Chain q2

60S ribosomal protein L42-A

Chain sM

Suppressor protein STM1