J4_4U56_005

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GG*CUUAAC*GGAAGAG*UC

Length

17 nucleotides

Bulged bases

4U56|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U56|1|1|G|1674
4U56|1|1|G|1675
*
4U56|1|1|C|1693
4U56|1|1|U|1694
4U56|1|1|U|1695
4U56|1|1|A|1696
4U56|1|1|A|1697
4U56|1|1|C|1698
*
4U56|1|1|G|1747
4U56|1|1|G|1748
4U56|1|1|A|1749
4U56|1|1|A|1750
4U56|1|1|G|1751
4U56|1|1|A|1752
4U56|1|1|G|1753
*
4U56|1|1|U|1772
4U56|1|1|C|1773

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain O4

60S ribosomal protein L34-A

Chain O8

60S ribosomal protein L38