J4_4U67_005

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

AUG*UU*GGGAG*CGAAGU

Length

16 nucleotides

Bulged bases

4U67|1|X|U|1459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4U67_005 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.1293

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4U67|1|X|A|1458
4U67|1|X|U|1459
4U67|1|X|G|1460
*
4U67|1|X|U|1481
4U67|1|X|U|1482
*
4U67|1|X|G|1541
4U67|1|X|G|1542
4U67|1|X|G|1543
4U67|1|X|A|1544
4U67|1|X|G|1545
*
4U67|1|X|C|1558
4U67|1|X|G|1559
4U67|1|X|A|1560
4U67|1|X|A|1561
4U67|1|X|G|1562
4U67|1|X|U|1563

Current chains

Chain X

23s RNA

Nearby chains