3D structure

PDB id
4U6F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of T-2 toxin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
4U6F|1|5|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U6F|1|5|G|1492
4U6F|1|5|G|1493
4U6F|1|5|U|1494
4U6F|1|5|U|1495
4U6F|1|5|C|1496
*
4U6F|1|5|G|1520
4U6F|1|5|G|1521
4U6F|1|5|U|1522
4U6F|1|5|U|1523
4U6F|1|5|A|1524
4U6F|1|5|G|1525
*
4U6F|1|5|C|1614
4U6F|1|5|C|1615
*
4U6F|1|5|G|1829
4U6F|1|5|G|1830
4U6F|1|5|U|1831
4U6F|1|5|C|1832
4U6F|1|5|G|1833
4U6F|1|5|U|1834
4U6F|1|5|A|1835
4U6F|1|5|C|1836

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain m9
60S ribosomal protein L19-A
Chain n5
60S ribosomal protein L25
Chain o4
60S ribosomal protein L34-A
Chain o7
60S ribosomal protein L37-A
Chain o8
60S ribosomal protein L38
Chain o9
60S ribosomal protein L39

Coloring options:

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