J4_4V4G_006

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGGGACC*GGACAGCA*UGCACCGAUCA*UGAUUGCCCG

Length

36 nucleotides

Bulged bases

4V4G|1|BB|C|1396, 4V4G|1|BB|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|BB|C|1358
4V4G|1|BB|G|1359
4V4G|1|BB|G|1360
4V4G|1|BB|G|1361
4V4G|1|BB|A|1362
4V4G|1|BB|C|1363
4V4G|1|BB|C|1364
*
4V4G|1|BB|G|1393
4V4G|1|BB|G|1394
4V4G|1|BB|A|1395
4V4G|1|BB|C|1396
4V4G|1|BB|A|1397
4V4G|1|BB|G|1398
4V4G|1|BB|C|1399
4V4G|1|BB|A|1400
*
4V4G|1|BB|U|1413
4V4G|1|BB|G|1414
4V4G|1|BB|C|1415
4V4G|1|BB|A|1416
4V4G|1|BB|C|1417
4V4G|1|BB|C|1418
4V4G|1|BB|G|1419
4V4G|1|BB|A|1420
4V4G|1|BB|U|1421
4V4G|1|BB|C|1422
4V4G|1|BB|A|1423
*
4V4G|1|BB|U|1608
4V4G|1|BB|G|1609
4V4G|1|BB|A|1610
4V4G|1|BB|U|1611
4V4G|1|BB|U|1612
4V4G|1|BB|G|1613
4V4G|1|BB|C|1614
4V4G|1|BB|C|1615
4V4G|1|BB|C|1616
4V4G|1|BB|G|1617

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BU

50S ribosomal protein L23