J4_4V4G_018

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

ACUUUGCAAUCUCA*UC*GCGCAGUGAAUAGG*CGCUGU

Length

36 nucleotides

Bulged bases

4V4G|1|DB|G|1749, 4V4G|1|DB|G|1754, 4V4G|1|DB|G|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|DB|A|1686
4V4G|1|DB|C|1687
4V4G|1|DB|U|1688
4V4G|1|DB|U|1689
4V4G|1|DB|U|1690
4V4G|1|DB|G|1691
4V4G|1|DB|C|1692
4V4G|1|DB|A|1693
4V4G|1|DB|A|1694
4V4G|1|DB|U|1695
4V4G|1|DB|C|1696
4V4G|1|DB|U|1697
4V4G|1|DB|C|1698
4V4G|1|DB|A|1699
*
4V4G|1|DB|U|1723
4V4G|1|DB|C|1724
*
4V4G|1|DB|G|1742
4V4G|1|DB|C|1743
4V4G|1|DB|G|1744
4V4G|1|DB|C|1745
4V4G|1|DB|A|1746
4V4G|1|DB|G|1747
4V4G|1|DB|U|1748
4V4G|1|DB|G|1749
4V4G|1|DB|A|1750
4V4G|1|DB|A|1751
4V4G|1|DB|U|1752
4V4G|1|DB|A|1753
4V4G|1|DB|G|1754
4V4G|1|DB|G|1755
*
4V4G|1|DB|C|1971
4V4G|1|DB|G|1972
4V4G|1|DB|C|1973
4V4G|1|DB|U|1974
4V4G|1|DB|G|1975
4V4G|1|DB|U|1976

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DE

50S ribosomal protein L3

Chain DL

50S ribosomal protein L14

Chain DQ

50S ribosomal protein L19