J4_4V4G_021

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CCAAAG*UUGACUG*CAGGG*CGGG

Length

22 nucleotides

Bulged bases

4V4G|1|DB|A|2265, 4V4G|1|DB|U|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|DB|C|2263
4V4G|1|DB|C|2264
4V4G|1|DB|A|2265
4V4G|1|DB|A|2266
4V4G|1|DB|A|2267
4V4G|1|DB|G|2268
*
4V4G|1|DB|U|2322
4V4G|1|DB|U|2323
4V4G|1|DB|G|2324
4V4G|1|DB|A|2325
4V4G|1|DB|C|2326
4V4G|1|DB|U|2327
4V4G|1|DB|G|2328
*
4V4G|1|DB|C|2347
4V4G|1|DB|A|2348
4V4G|1|DB|G|2349
4V4G|1|DB|G|2350
4V4G|1|DB|G|2351
*
4V4G|1|DB|C|2360
4V4G|1|DB|G|2361
4V4G|1|DB|G|2362
4V4G|1|DB|G|2363

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain D3

50S ribosomal protein L33

Chain D5

50S ribosomal protein L35

Chain DX

50S ribosomal protein L27