J4_4V4G_030

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUG*CGGCCG*CGGUCCUAAGGUAGCGAAAUUCCUUG*CCUGCACGAAAG

Length

47 nucleotides

Bulged bases

4V4G|1|FB|A|1921, 4V4G|1|FB|U|1926, 4V4G|1|FB|U|1927, 4V4G|1|FB|U|1946, 4V4G|1|FB|A|1954

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|FB|C|1825
4V4G|1|FB|U|1826
4V4G|1|FB|G|1827
*
4V4G|1|FB|C|1888
4V4G|1|FB|G|1889
4V4G|1|FB|G|1890
4V4G|1|FB|C|1891
4V4G|1|FB|C|1892
4V4G|1|FB|G|1893
*
4V4G|1|FB|C|1903
4V4G|1|FB|G|1904
4V4G|1|FB|G|1905
4V4G|1|FB|U|1906
4V4G|1|FB|C|1907
4V4G|1|FB|C|1908
4V4G|1|FB|U|1909
4V4G|1|FB|A|1910
4V4G|1|FB|A|1911
4V4G|1|FB|G|1912
4V4G|1|FB|G|1913
4V4G|1|FB|U|1914
4V4G|1|FB|A|1915
4V4G|1|FB|G|1916
4V4G|1|FB|C|1917
4V4G|1|FB|G|1918
4V4G|1|FB|A|1919
4V4G|1|FB|A|1920
4V4G|1|FB|A|1921
4V4G|1|FB|U|1922
4V4G|1|FB|U|1923
4V4G|1|FB|C|1924
4V4G|1|FB|C|1925
4V4G|1|FB|U|1926
4V4G|1|FB|U|1927
4V4G|1|FB|G|1928
*
4V4G|1|FB|C|1944
4V4G|1|FB|C|1945
4V4G|1|FB|U|1946
4V4G|1|FB|G|1947
4V4G|1|FB|C|1948
4V4G|1|FB|A|1949
4V4G|1|FB|C|1950
4V4G|1|FB|G|1951
4V4G|1|FB|A|1952
4V4G|1|FB|A|1953
4V4G|1|FB|A|1954
4V4G|1|FB|G|1955

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain EA

Small subunit ribosomal RNA; SSU rRNA

Chain Ea

protein Y

Chain FD

50S ribosomal protein L2