J4_4V4G_043

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGAGUU*GAACG*CGGAACGGAUAAC*GGAAGCCAGCC

Length

35 nucleotides

Bulged bases

4V4G|1|HB|G|2624, 4V4G|1|HB|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|HB|G|2621
4V4G|1|HB|G|2622
4V4G|1|HB|A|2623
4V4G|1|HB|G|2624
4V4G|1|HB|U|2625
4V4G|1|HB|U|2626
*
4V4G|1|HB|G|2652
4V4G|1|HB|A|2653
4V4G|1|HB|A|2654
4V4G|1|HB|C|2655
4V4G|1|HB|G|2656
*
4V4G|1|HB|C|2710
4V4G|1|HB|G|2711
4V4G|1|HB|G|2712
4V4G|1|HB|A|2713
4V4G|1|HB|A|2714
4V4G|1|HB|C|2715
4V4G|1|HB|G|2716
4V4G|1|HB|G|2717
4V4G|1|HB|A|2718
4V4G|1|HB|U|2719
4V4G|1|HB|A|2720
4V4G|1|HB|A|2721
4V4G|1|HB|C|2722
*
4V4G|1|HB|G|2742
4V4G|1|HB|G|2743
4V4G|1|HB|A|2744
4V4G|1|HB|A|2745
4V4G|1|HB|G|2746
4V4G|1|HB|C|2747
4V4G|1|HB|C|2748
4V4G|1|HB|A|2749
4V4G|1|HB|G|2750
4V4G|1|HB|C|2751
4V4G|1|HB|C|2752

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H6

50S ribosomal protein L36

Chain HE

50S ribosomal protein L3

Chain HH

50S ribosomal protein L6

Chain HK

50S ribosomal protein L13

Chain HL

50S ribosomal protein L14