J4_4V4G_048

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUGCGAG*CGGAG*CGAGUCC*GGGCGGCAUUAGUAC

Length

34 nucleotides

Bulged bases

4V4G|1|JB|A|613, 4V4G|1|JB|G|637, 4V4G|1|JB|A|665, 4V4G|1|JB|U|666, 4V4G|1|JB|U|667, 4V4G|1|JB|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|JB|G|608
4V4G|1|JB|U|609
4V4G|1|JB|G|610
4V4G|1|JB|C|611
4V4G|1|JB|G|612
4V4G|1|JB|A|613
4V4G|1|JB|G|614
*
4V4G|1|JB|C|635
4V4G|1|JB|G|636
4V4G|1|JB|G|637
4V4G|1|JB|A|638
4V4G|1|JB|G|639
*
4V4G|1|JB|C|646
4V4G|1|JB|G|647
4V4G|1|JB|A|648
4V4G|1|JB|G|649
4V4G|1|JB|U|650
4V4G|1|JB|C|651
4V4G|1|JB|C|652
*
4V4G|1|JB|G|658
4V4G|1|JB|G|659
4V4G|1|JB|G|660
4V4G|1|JB|C|661
4V4G|1|JB|G|662
4V4G|1|JB|G|663
4V4G|1|JB|C|664
4V4G|1|JB|A|665
4V4G|1|JB|U|666
4V4G|1|JB|U|667
4V4G|1|JB|A|668
4V4G|1|JB|G|669
4V4G|1|JB|U|670
4V4G|1|JB|A|671
4V4G|1|JB|C|672

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain J5

50S ribosomal protein L35

Chain JF

50S ribosomal protein L4

Chain JM

50S ribosomal protein L15