J4_4V4G_056

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAGGGG*CCCCAUGUGGA*UCCAAAGGG*CCCGC

Length

31 nucleotides

Bulged bases

4V4G|1|AA|U|182, 4V4G|1|AA|G|183, 4V4G|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|AA|G|142
4V4G|1|AA|A|143
4V4G|1|AA|G|144
4V4G|1|AA|G|145
4V4G|1|AA|G|146
4V4G|1|AA|G|147
*
4V4G|1|AA|C|175
4V4G|1|AA|C|176
4V4G|1|AA|C|177
4V4G|1|AA|C|178
4V4G|1|AA|A|179
4V4G|1|AA|U|180
4V4G|1|AA|G|181
4V4G|1|AA|U|182
4V4G|1|AA|G|183
4V4G|1|AA|G|184
4V4G|1|AA|A|185
*
4V4G|1|AA|U|192
4V4G|1|AA|C|193
4V4G|1|AA|C|194
4V4G|1|AA|A|195
4V4G|1|AA|A|196
4V4G|1|AA|A|197
4V4G|1|AA|G|198
4V4G|1|AA|G|199
4V4G|1|AA|G|200
*
4V4G|1|AA|C|217
4V4G|1|AA|C|218
4V4G|1|AA|C|219
4V4G|1|AA|G|220
4V4G|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20

Chain GA

Small subunit ribosomal RNA; SSU rRNA

Chain GT

30S ribosomal protein S20