J4_4V4G_077

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAGUU*GAACGGACCGCU*AUGUCCGGAACGGAUAAC*GGAAGCCAGC

Length

45 nucleotides

Bulged bases

4V4G|1|FB|G|2661, 4V4G|1|FB|C|2662, 4V4G|1|FB|U|2706, 4V4G|1|FB|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|FB|G|2622
4V4G|1|FB|A|2623
4V4G|1|FB|G|2624
4V4G|1|FB|U|2625
4V4G|1|FB|U|2626
*
4V4G|1|FB|G|2652
4V4G|1|FB|A|2653
4V4G|1|FB|A|2654
4V4G|1|FB|C|2655
4V4G|1|FB|G|2656
4V4G|1|FB|G|2657
4V4G|1|FB|A|2658
4V4G|1|FB|C|2659
4V4G|1|FB|C|2660
4V4G|1|FB|G|2661
4V4G|1|FB|C|2662
4V4G|1|FB|U|2663
*
4V4G|1|FB|A|2705
4V4G|1|FB|U|2706
4V4G|1|FB|G|2707
4V4G|1|FB|U|2708
4V4G|1|FB|C|2709
4V4G|1|FB|C|2710
4V4G|1|FB|G|2711
4V4G|1|FB|G|2712
4V4G|1|FB|A|2713
4V4G|1|FB|A|2714
4V4G|1|FB|C|2715
4V4G|1|FB|G|2716
4V4G|1|FB|G|2717
4V4G|1|FB|A|2718
4V4G|1|FB|U|2719
4V4G|1|FB|A|2720
4V4G|1|FB|A|2721
4V4G|1|FB|C|2722
*
4V4G|1|FB|G|2742
4V4G|1|FB|G|2743
4V4G|1|FB|A|2744
4V4G|1|FB|A|2745
4V4G|1|FB|G|2746
4V4G|1|FB|C|2747
4V4G|1|FB|C|2748
4V4G|1|FB|A|2749
4V4G|1|FB|G|2750
4V4G|1|FB|C|2751

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain F6

50S ribosomal protein L36

Chain FE

50S ribosomal protein L3

Chain FH

50S ribosomal protein L6

Chain FK

50S ribosomal protein L13

Chain FL

50S ribosomal protein L14

Chain FQ

50S ribosomal protein L19