J4_4V4G_081

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CCCAAAUU*ACUGUAAGG*CUGAAUCCG*CAAGG

Length

31 nucleotides

Bulged bases

4V4G|1|HB|A|247, 4V4G|1|HB|A|248, 4V4G|1|HB|C|369, 4V4G|1|HB|U|370, 4V4G|1|HB|G|371, 4V4G|1|HB|U|372, 4V4G|1|HB|A|373, 4V4G|1|HB|A|387, 4V4G|1|HB|G|413, 4V4G|1|HB|C|418, 4V4G|1|HB|A|435, 4V4G|1|HB|A|436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|HB|C|244
4V4G|1|HB|C|245
4V4G|1|HB|C|246
4V4G|1|HB|A|247
4V4G|1|HB|A|248
4V4G|1|HB|A|292
4V4G|1|HB|U|293
4V4G|1|HB|U|294
*
4V4G|1|HB|A|368
4V4G|1|HB|C|369
4V4G|1|HB|U|370
4V4G|1|HB|G|371
4V4G|1|HB|U|372
4V4G|1|HB|A|373
4V4G|1|HB|A|387
4V4G|1|HB|G|388
4V4G|1|HB|G|389
*
4V4G|1|HB|C|411
4V4G|1|HB|U|412
4V4G|1|HB|G|413
4V4G|1|HB|A|414
4V4G|1|HB|A|415
4V4G|1|HB|U|416
4V4G|1|HB|C|417
4V4G|1|HB|C|418
4V4G|1|HB|G|419
*
4V4G|1|HB|C|434
4V4G|1|HB|A|435
4V4G|1|HB|A|436
4V4G|1|HB|G|437
4V4G|1|HB|G|438

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H1

50S ribosomal protein L31

Chain H7

50S ribosomal protein L1P