J4_4V4Q_017

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4V4Q|1|CA|C|576, 4V4Q|1|CA|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4Q_017 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.1552

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V4Q|1|CA|G|575
4V4Q|1|CA|C|576
4V4Q|1|CA|G|577
*
4V4Q|1|CA|C|764
4V4Q|1|CA|G|765
4V4Q|1|CA|A|766
4V4Q|1|CA|A|767
4V4Q|1|CA|A|768
4V4Q|1|CA|G|769
*
4V4Q|1|CA|C|810
4V4Q|1|CA|C|811
4V4Q|1|CA|G|812
4V4Q|1|CA|U|813
4V4Q|1|CA|A|814
4V4Q|1|CA|A|815
4V4Q|1|CA|A|816
4V4Q|1|CA|C|817
4V4Q|1|CA|G|818
4V4Q|1|CA|A|819
4V4Q|1|CA|U|820
4V4Q|1|CA|G|821
*
4V4Q|1|CA|C|879
4V4Q|1|CA|C|880

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CK

30S ribosomal protein S11

Chain CL

30S ribosomal protein S12

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17

Chain CU

30S ribosomal protein S21

Chain DB

Large subunit ribosomal RNA; LSU rRNA