3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
4V4Q|1|DB|U|653, 4V4Q|1|DB|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V4Q_020 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.3579
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

4V4Q|1|DB|C|601
4V4Q|1|DB|A|602
4V4Q|1|DB|A|603
4V4Q|1|DB|G|604
*
4V4Q|1|DB|C|624
4V4Q|1|DB|G|625
4V4Q|1|DB|A|626
4V4Q|1|DB|A|627
4V4Q|1|DB|G|628
*
4V4Q|1|DB|C|635
4V4Q|1|DB|G|636
4V4Q|1|DB|A|637
4V4Q|1|DB|G|638
*
4V4Q|1|DB|C|650
4V4Q|1|DB|G|651
4V4Q|1|DB|U|652
4V4Q|1|DB|U|653
4V4Q|1|DB|A|654
4V4Q|1|DB|A|655
4V4Q|1|DB|G|656

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain D3
50S ribosomal protein L35
Chain DE
50S ribosomal protein L4
Chain DL
50S ribosomal protein L15

Coloring options:


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