J4_4V4R_006

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

CUAGCCGAAG*CGCC*GAGG*CCGUAGGCGAAAG

Length

31 nucleotides

Bulged bases

4V4R|1|BA|G|338, 4V4R|1|BA|G|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4R|1|BA|C|292
4V4R|1|BA|U|293
4V4R|1|BA|A|294
4V4R|1|BA|G|295
4V4R|1|BA|C|296
4V4R|1|BA|C|297
4V4R|1|BA|G|298
4V4R|1|BA|A|299
4V4R|1|BA|A|300
4V4R|1|BA|G|301
*
4V4R|1|BA|C|316
4V4R|1|BA|G|317
4V4R|1|BA|C|318
4V4R|1|BA|C|319
*
4V4R|1|BA|G|323
4V4R|1|BA|A|324
4V4R|1|BA|G|325
4V4R|1|BA|G|326
*
4V4R|1|BA|C|336
4V4R|1|BA|C|337
4V4R|1|BA|G|338
4V4R|1|BA|U|339
4V4R|1|BA|A|340
4V4R|1|BA|G|341
4V4R|1|BA|G|342
4V4R|1|BA|C|343
4V4R|1|BA|G|344
4V4R|1|BA|A|345
4V4R|1|BA|A|346
4V4R|1|BA|A|347
4V4R|1|BA|G|348

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein 24