J4_4V4T_005

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CACCGCGCUUUUGCGCGGGG

Length

36 nucleotides

Bulged bases

4V4T|1|BA|U|50, 4V4T|1|BA|U|161, 4V4T|1|BA|U|162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|C|47
4V4T|1|BA|G|48
4V4T|1|BA|A|49
4V4T|1|BA|U|50
4V4T|1|BA|G|51
4V4T|1|BA|A|52
4V4T|1|BA|A|53
4V4T|1|BA|G|54
*
4V4T|1|BA|C|116
4V4T|1|BA|G|117
4V4T|1|BA|A|118
4V4T|1|BA|A|119
4V4T|1|BA|U|120
4V4T|1|BA|G|121
*
4V4T|1|BA|C|130
4V4T|1|BA|G|131
*
4V4T|1|BA|C|148
4V4T|1|BA|A|149
4V4T|1|BA|C|150
4V4T|1|BA|C|151
4V4T|1|BA|G|152
4V4T|1|BA|C|153
4V4T|1|BA|G|154
4V4T|1|BA|C|155
4V4T|1|BA|U|161
4V4T|1|BA|U|162
4V4T|1|BA|U|163
4V4T|1|BA|U|164
4V4T|1|BA|G|171
4V4T|1|BA|C|172
4V4T|1|BA|G|173
4V4T|1|BA|C|174
4V4T|1|BA|G|175
4V4T|1|BA|G|176
4V4T|1|BA|G|177
4V4T|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain B7

50S ribosomal protein L34