J4_4V4T_013

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GGGGC*GAC*GGAAG*CGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|G|2642
4V4T|1|BA|G|2643
4V4T|1|BA|G|2644
4V4T|1|BA|G|2645
4V4T|1|BA|C|2646
*
4V4T|1|BA|G|2674
4V4T|1|BA|A|2675
4V4T|1|BA|C|2676
*
4V4T|1|BA|G|2731
4V4T|1|BA|G|2732
4V4T|1|BA|A|2733
4V4T|1|BA|A|2734
4V4T|1|BA|G|2735
*
4V4T|1|BA|C|2769
4V4T|1|BA|G|2770
4V4T|1|BA|C|2771
4V4T|1|BA|C|2772

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13

Chain BO

50S ribosomal protein L14