J4_4V4X_003

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

4V4X|1|AA|U|571, 4V4X|1|AA|A|572, 4V4X|1|AA|G|576, 4V4X|1|AA|A|815, 4V4X|1|AA|C|817, 4V4X|1|AA|G|818, 4V4X|1|AA|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4X|1|AA|C|569
4V4X|1|AA|G|570
4V4X|1|AA|U|571
4V4X|1|AA|A|572
4V4X|1|AA|A|573
4V4X|1|AA|A|574
4V4X|1|AA|G|575
4V4X|1|AA|G|576
4V4X|1|AA|G|577
*
4V4X|1|AA|C|764
4V4X|1|AA|G|765
4V4X|1|AA|A|766
4V4X|1|AA|A|767
4V4X|1|AA|A|768
4V4X|1|AA|G|769
*
4V4X|1|AA|C|810
4V4X|1|AA|C|811
4V4X|1|AA|C|812
4V4X|1|AA|U|813
4V4X|1|AA|A|814
4V4X|1|AA|A|815
4V4X|1|AA|A|816
4V4X|1|AA|C|817
4V4X|1|AA|G|818
4V4X|1|AA|A|819
4V4X|1|AA|U|820
4V4X|1|AA|G|821
*
4V4X|1|AA|C|879
4V4X|1|AA|C|880
4V4X|1|AA|G|881

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S8

Chain AO

30S ribosomal protein S12

Chain AR

30S ribosomal protein S15

Chain AT

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA