3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
CGAUAAA*UC*GCGC*GG
Length
15 nucleotides
Bulged bases
4V4X|1|BA|G|1271, 4V4X|1|BA|A|1272, 4V4X|1|BA|U|1273, 4V4X|1|BA|G|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V4X_007 not in the Motif Atlas
Homologous match to J4_9DFE_003
Geometric discrepancy: 0.2672
The information below is about J4_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

4V4X|1|BA|C|1270
4V4X|1|BA|G|1271
4V4X|1|BA|A|1272
4V4X|1|BA|U|1273
4V4X|1|BA|A|1274
4V4X|1|BA|A|1275
4V4X|1|BA|A|1276
*
4V4X|1|BA|U|1294
4V4X|1|BA|C|1295
*
4V4X|1|BA|G|1645
4V4X|1|BA|C|1646
4V4X|1|BA|G|1647
4V4X|1|BA|C|1648
*
4V4X|1|BA|G|2009
4V4X|1|BA|G|2010

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L32
Chain BQ
50S ribosomal protein L17
Chain BV
50S ribosomal protein L22

Coloring options:


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