J4_4V4Y_007

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CACCGCGCUUUUGCGCGGGG

Length

36 nucleotides

Bulged bases

4V4Y|1|BA|U|50, 4V4Y|1|BA|U|161, 4V4Y|1|BA|U|162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|C|47
4V4Y|1|BA|G|48
4V4Y|1|BA|A|49
4V4Y|1|BA|U|50
4V4Y|1|BA|G|51
4V4Y|1|BA|A|52
4V4Y|1|BA|A|53
4V4Y|1|BA|G|54
*
4V4Y|1|BA|C|116
4V4Y|1|BA|G|117
4V4Y|1|BA|A|118
4V4Y|1|BA|A|119
4V4Y|1|BA|U|120
4V4Y|1|BA|G|121
*
4V4Y|1|BA|C|130
4V4Y|1|BA|G|131
*
4V4Y|1|BA|C|148
4V4Y|1|BA|A|149
4V4Y|1|BA|C|150
4V4Y|1|BA|C|151
4V4Y|1|BA|G|152
4V4Y|1|BA|C|153
4V4Y|1|BA|G|154
4V4Y|1|BA|C|155
4V4Y|1|BA|U|161
4V4Y|1|BA|U|162
4V4Y|1|BA|U|163
4V4Y|1|BA|U|164
4V4Y|1|BA|G|171
4V4Y|1|BA|C|172
4V4Y|1|BA|G|173
4V4Y|1|BA|C|174
4V4Y|1|BA|G|175
4V4Y|1|BA|G|176
4V4Y|1|BA|G|177
4V4Y|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BW

50S ribosomal protein L23