J4_4V4Y_011

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GAC*GCCAGAAG*CGUGGUGGGGAAGC*GUGACAACC

Length

34 nucleotides

Bulged bases

4V4Y|1|BA|A|1444|||A, 4V4Y|1|BA|G|1527, 4V4Y|1|BA|A|1529, 4V4Y|1|BA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|G|1444
4V4Y|1|BA|A|1444|||A
4V4Y|1|BA|C|1445
*
4V4Y|1|BA|G|1466
4V4Y|1|BA|C|1467
4V4Y|1|BA|C|1468
4V4Y|1|BA|A|1469
4V4Y|1|BA|G|1470
4V4Y|1|BA|A|1471
4V4Y|1|BA|A|1472
4V4Y|1|BA|G|1473
*
4V4Y|1|BA|C|1518
4V4Y|1|BA|G|1519
4V4Y|1|BA|U|1520
4V4Y|1|BA|G|1521
4V4Y|1|BA|G|1522
4V4Y|1|BA|U|1523
4V4Y|1|BA|G|1524
4V4Y|1|BA|G|1525
4V4Y|1|BA|G|1526
4V4Y|1|BA|G|1527
4V4Y|1|BA|A|1528
4V4Y|1|BA|A|1529
4V4Y|1|BA|G|1530
4V4Y|1|BA|C|1531
*
4V4Y|1|BA|G|1540
4V4Y|1|BA|U|1541
4V4Y|1|BA|G|1542
4V4Y|1|BA|A|1543
4V4Y|1|BA|C|1544
4V4Y|1|BA|A|1545
4V4Y|1|BA|A|1545|||A
4V4Y|1|BA|C|1546
4V4Y|1|BA|C|1547

Current chains

Chain BA

23S ribosomal RNA

Nearby chains