Loop J4_4V4Y

3D structure

PDB id: 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
Experimental method: X-RAY DIFFRACTION
Resolution: 5.5 Å

Loop

Sequence: UUG*CG*CCUAAGGUAGCGAAAUUCCUUG*CCUGCACGAAAA
Length: 39 nucleotides
Bulged bases: 4V4Y|1|BA|A|1937, 4V4Y|1|BA|A|1938, 4V4Y|1|BA|U|1939, 4V4Y|1|BA|U|1944, 4V4Y|1|BA|U|1963, 4V4Y|1|BA|G|1968, 4V4Y|1|BA|A|1971
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4Y|1|BA|U|1833
4V4Y|1|BA|U|1834
4V4Y|1|BA|G|1835
*
4V4Y|1|BA|C|1905
4V4Y|1|BA|G|1906
*
4V4Y|1|BA|C|1924
4V4Y|1|BA|C|1925
4V4Y|1|BA|U|1926
4V4Y|1|BA|A|1927
4V4Y|1|BA|A|1928
4V4Y|1|BA|G|1929
4V4Y|1|BA|G|1930
4V4Y|1|BA|U|1931
4V4Y|1|BA|A|1932
4V4Y|1|BA|G|1933
4V4Y|1|BA|C|1934
4V4Y|1|BA|G|1935
4V4Y|1|BA|A|1936
4V4Y|1|BA|A|1937
4V4Y|1|BA|A|1938
4V4Y|1|BA|U|1939
4V4Y|1|BA|U|1940
4V4Y|1|BA|C|1941
4V4Y|1|BA|C|1942
4V4Y|1|BA|U|1943
4V4Y|1|BA|U|1944
4V4Y|1|BA|G|1945
*
4V4Y|1|BA|C|1961
4V4Y|1|BA|C|1962
4V4Y|1|BA|U|1963
4V4Y|1|BA|G|1964
4V4Y|1|BA|C|1965
4V4Y|1|BA|A|1966
4V4Y|1|BA|C|1967
4V4Y|1|BA|G|1968
4V4Y|1|BA|A|1969
4V4Y|1|BA|A|1970
4V4Y|1|BA|A|1971
4V4Y|1|BA|A|1972

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain AA: Small subunit ribosomal RNA; SSU rRNA
Chain AB: Transfer RNA; tRNA
Chain AC: Transfer RNA; tRNA
Chain BD: 50S ribosomal protein L2
Chain BZ: Ribosomal protein L27

J4_4V4Y_013