J4_4V4Y_016
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 4V4Y|1|AA|G|570, 4V4Y|1|AA|U|571, 4V4Y|1|AA|A|572, 4V4Y|1|AA|G|576, 4V4Y|1|AA|G|818, 4V4Y|1|AA|A|819, 4V4Y|1|AA|U|820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4Y|1|AA|C|569
4V4Y|1|AA|G|570
4V4Y|1|AA|U|571
4V4Y|1|AA|A|572
4V4Y|1|AA|A|573
4V4Y|1|AA|A|574
4V4Y|1|AA|G|575
4V4Y|1|AA|G|576
4V4Y|1|AA|G|577
*
4V4Y|1|AA|C|764
4V4Y|1|AA|G|765
4V4Y|1|AA|A|766
4V4Y|1|AA|A|767
4V4Y|1|AA|A|768
4V4Y|1|AA|G|769
*
4V4Y|1|AA|C|810
4V4Y|1|AA|C|811
4V4Y|1|AA|C|812
4V4Y|1|AA|U|813
4V4Y|1|AA|A|814
4V4Y|1|AA|A|815
4V4Y|1|AA|A|816
4V4Y|1|AA|C|817
4V4Y|1|AA|G|818
4V4Y|1|AA|A|819
4V4Y|1|AA|U|820
4V4Y|1|AA|G|821
*
4V4Y|1|AA|C|879
4V4Y|1|AA|C|880
4V4Y|1|AA|G|881
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AK
- 30S ribosomal protein S8
- Chain AN
- 30S ribosomal protein S11
- Chain AO
- 30S ribosomal protein S12
- Chain AR
- 30S ribosomal protein S15
- Chain AT
- 30S ribosomal protein S17
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: