J4_4V4Z_010

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

4V4Z|1|BA|U|1775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V4Z_010 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.1855

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V4Z|1|BA|G|1772
4V4Z|1|BA|A|1773
4V4Z|1|BA|C|1774
4V4Z|1|BA|U|1775
4V4Z|1|BA|G|1776
*
4V4Z|1|BA|C|1788
4V4Z|1|BA|A|1789
4V4Z|1|BA|C|1790
4V4Z|1|BA|A|1791
4V4Z|1|BA|G|1792
*
4V4Z|1|BA|C|1827
4V4Z|1|BA|G|1828
4V4Z|1|BA|A|1829
4V4Z|1|BA|C|1830
*
4V4Z|1|BA|G|1975
4V4Z|1|BA|U|1976
4V4Z|1|BA|A|1977
4V4Z|1|BA|A|1978
4V4Z|1|BA|C|1979

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2