J4_4V50_008

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V50|1|BB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V50_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.153

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V50|1|BB|G|1310
4V50|1|BB|G|1311
4V50|1|BB|U|1312
4V50|1|BB|U|1313
4V50|1|BB|C|1314
*
4V50|1|BB|G|1338
4V50|1|BB|G|1339
4V50|1|BB|U|1340
4V50|1|BB|G|1341
4V50|1|BB|A|1342
4V50|1|BB|G|1343
*
4V50|1|BB|C|1404
4V50|1|BB|U|1405
*
4V50|1|BB|A|1597
4V50|1|BB|A|1598
4V50|1|BB|U|1599
4V50|1|BB|C|1600
4V50|1|BB|G|1601
4V50|1|BB|U|1602
4V50|1|BB|A|1603
4V50|1|BB|C|1604

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23