J4_4V52_006

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V52|1|BB|U|653, 4V52|1|BB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V52_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.3056

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V52|1|BB|C|601
4V52|1|BB|A|602
4V52|1|BB|A|603
4V52|1|BB|G|604
*
4V52|1|BB|C|624
4V52|1|BB|G|625
4V52|1|BB|A|626
4V52|1|BB|A|627
4V52|1|BB|G|628
*
4V52|1|BB|C|635
4V52|1|BB|G|636
4V52|1|BB|A|637
4V52|1|BB|G|638
*
4V52|1|BB|C|650
4V52|1|BB|G|651
4V52|1|BB|U|652
4V52|1|BB|U|653
4V52|1|BB|A|654
4V52|1|BB|A|655
4V52|1|BB|G|656

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15