J4_4V52_016

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V52|1|CA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V52|1|CA|G|142
4V52|1|CA|A|143
4V52|1|CA|G|144
*
4V52|1|CA|C|178
4V52|1|CA|A|179
4V52|1|CA|U|180
4V52|1|CA|A|181
4V52|1|CA|A|182
4V52|1|CA|C|183
4V52|1|CA|G|184
*
4V52|1|CA|C|193
4V52|1|CA|C|194
4V52|1|CA|A|195
4V52|1|CA|A|196
4V52|1|CA|A|197
4V52|1|CA|G|198
*
4V52|1|CA|U|219
4V52|1|CA|G|220
4V52|1|CA|C|221

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20