J4_4V52_026

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V52|1|DB|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V52_026 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.109

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

4V52|1|DB|C|1833
4V52|1|DB|U|1834
4V52|1|DB|G|1835
*
4V52|1|DB|C|1905
4V52|1|DB|G|1906
*
4V52|1|DB|C|1924
4V52|1|DB|C|1925
4V52|1|DB|U|1926
4V52|1|DB|A|1927
4V52|1|DB|A|1928
4V52|1|DB|G|1929
4V52|1|DB|G|1930
4V52|1|DB|U|1931
4V52|1|DB|A|1932
4V52|1|DB|G|1933
*
4V52|1|DB|C|1967
4V52|1|DB|G|1968
4V52|1|DB|A|1969
4V52|1|DB|A|1970
4V52|1|DB|U|1971
4V52|1|DB|G|1972

Current chains

Chain DB

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2