J4_4V53_002

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V53|1|AA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V53|1|AA|G|142
4V53|1|AA|A|143
4V53|1|AA|G|144
*
4V53|1|AA|C|178
4V53|1|AA|A|179
4V53|1|AA|U|180
4V53|1|AA|A|181
4V53|1|AA|A|182
4V53|1|AA|C|183
4V53|1|AA|G|184
*
4V53|1|AA|C|193
4V53|1|AA|C|194
4V53|1|AA|A|195
4V53|1|AA|A|196
4V53|1|AA|A|197
4V53|1|AA|G|198
*
4V53|1|AA|U|219
4V53|1|AA|G|220
4V53|1|AA|C|221

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20